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Pipelines

Current pipelines at NWGC:

PIPELINE ALIGNER VARIANT CALLERS DELIVERABLES
AoU srWGS* Dragen Dragen Annotated VCF, CRAMs
AoU LR Ont MM2 Clair3, Sniffles2 VCFs and BAMs
AoU LR PB PBMM2 Clair3, PBSV, Sniffles2 VCFs and BAMs
TOPMed RNA-Seq STAR RSEM, RNA-SeqQC Gene and isoform expression counts, BAMs
srWGS, WXS, Custom capture BWA-Mem GATK Annotated VCF, CRAMs
* CLIA-validated, Clinical Pipeline

All Already Prepared Libraries submitted for sequencing only will be delivered as FASTQs or raw data (BCLs, etc) can be requested for a fee.